BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB030E09SP1|AL429238
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig501 743 0.0
3x_Contig1781 296 6e-80
>3x_Contig501
Length = 2416
Score = 743 bits (369), Expect = 0.0
Identities = 377/385 (97%)
Strand = Plus / Minus
Query: 1 gatcttggccatcattgtgtggttagtcacttgcaaatgttacttgggcgaaatcaacgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatcttggccatcattgtgtggttagtcacttgcaaatgttacttgggcgaaatcaacgt 326
Query: 61 cgataacttggccaacagakgggtttcattcgccggtaacgctaccgcattgttcatggg 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgataacttggccaacagatgggtttcattcgccggtaacgctaccgcattgttcatggg 266
Query: 121 tggcatcctatccattggtctttctttgatctggccagatgatttcgattggaatagcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggcatcctatccattggtctttctttgatctggccagatgatttcgattggaatagcat 206
Query: 181 tagaaacaaaacwatcwtaactgaacatctagacagtgattcatcwtcttcagccgcycc 240
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 205 tagaaacaaaactatcttaactgaacatctagacagtgattcatcatcttcagccgctcc 146
Query: 241 atcaattgtacaagaggagaacagtaacgagaaggagtwgtacgaagtwaagggtggtga 300
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 145 atcaattgtacaagaggagaacagtaacgagaaggagttgtacgaagttaagggtggtga 86
Query: 301 accgttaaatgaaacttttactcatgagagggactwggatctacctcaggaggaagaaat 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 85 accgttaaatgaaacttttactcatgagagggacttggatctacctcaggaggaagaaat 26
Query: 361 tccattagcgaaattgaaaagacag 385
|||||||||||||||||||||||||
Sbjct: 25 tccattagcgaaattgaaaagacag 1
>3x_Contig1781
Length = 20717
Score = 296 bits (147), Expect = 6e-80
Identities = 232/267 (86%), Gaps = 2/267 (0%)
Strand = Plus / Plus
Query: 702 ttttttttcctktwatatattcaattcacgtacatatatttaaatatagatacatactct 761
||||||||||| | ||||||||||||||||||| | | | | ||||||||||||||||||
Sbjct: 1 ttttttttcctgtaatatattcaattcacgtacgtgtgtgtgaatatagatacatactct 60
Query: 762 tatcatttcatgtcttgcatagtctttttaatattaaattaaattaatcatttcatggct 821
||||||||||||||||||||||| | |||||||||| ||| ||||||||||||||||
Sbjct: 61 tatcatttcatgtcttgcatagtgtgggtaatattaaagtaagataatcatttcatggct 120
Query: 822 gttkttcaackatagcmgttccttctttkkcggctkattcaagkaackcatcaacaattt 881
||| | |||| ||||| || |||||||| ||||| ||||||| ||| || ||||||||
Sbjct: 121 gttgtacaacgatagcagtaccttctttggcggctgattcaaggaacgcagcaacaattg 180
Query: 882 cc-aaattatktaatbc-actctagkagaaccyttaacgatagaattgtccttctttgag 939
|| |||| || ||| | ||||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 181 cctaaatgatggaatgccactctaggagaacccttaacgatagatttgtccttctttgag 240
Query: 940 acggcttcatagaagttttcgaattct 966
|||||||||||||||||||||||||||
Sbjct: 241 acggcttcatagaagttttcgaattct 267
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.32
Gapped
Lambda K H
1.40 0.714 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7728
Number of Sequences: 1807
Number of extensions: 7728
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 2
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.6 bits)
S2: 50 (101.1 bits)